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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37639959_37640541_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37639959 - 37640541
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATTCAAGAATA
Flanking Amino Acid:
NIPTCLAIWKIAIAAECFLM
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
60.7
39.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
32.6
-2
3.4
43
44.4
Minor BPS
47.5
-0.1
1.9
62.82
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016854
37637420 - 37652848
15429