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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37641887_37642677_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37641887 - 37642677
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TCAAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATATTTATAATT
Flanking Amino Acid:
YWTNYEFHNKVILFYLSCIP
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.7
0.58
1
69.1
41.2
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
59.8
0.39
1.5
75.58
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016854
37637420 - 37652848
15429