Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37642844_37642923_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37642844 - 37642923

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTTCT

5'SS Class:

major

3'SS Sequence:

TCTTTTCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTGAA

U12 Branch Point Sequence:

GCCACCAGAACA

Flanking Amino Acid:

QQEIVQNIWLDYLVFINSKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

75.2

35.7

Major BPS

55.5

0.14

1.1

47.1

37.9

Major PPT

91.7

0.94

0.6

84.6

30.3

Minor 5ss

44.1

-0.6

2.8

56.3

41.9

Minor BPS

47.1

-0.2

1.8

55.01

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016854

37637420 - 37652848

15429