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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37650214_37650645_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37650214 - 37650645
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTTGTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.3
0.64
0.9
70.5
40.9
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016854
37637420 - 37652848
15429