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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37650833_37652724_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
37650833 - 37652724
Intron Length:
1892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAAATTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GCTTATTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.7
0.56
0.9
68.7
41.4
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
61.3
0.43
1.6
74.96
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016116
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016854
37637420 - 37652848
15429