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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37672730_37677074_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
37672730 - 37677074
Intron Length:
4345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
ACCAGTAATTCAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACC
Flanking Amino Acid:
QAWREPSPRKSKTFGRSPSR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
58.8
41.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
60.3
0.23
1
55.4
43.1
Minor 5ss
93.5
1.46
0.8
89
23.2
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028923
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040196
37672305 - 37677696
5392