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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37696607_37703092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37696607 - 37703092
Intron Length:
6486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAT
Flanking Amino Acid:
IVSMTASTYYGNLRPISPWR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
1
63.9
45.7
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
73.4
0.81
1.5
90.39
32.8

Associated Gene:

Gene:
TMEM19
Ensembl Gene ID:
ENSAPLG00000002431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029715
37686766 - 37709160
22395
ENSAPLT00000002445
37696456 - 37707762
11307
ENSAPLT00000042213
37696366 - 37709160
12795