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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37703207_37704696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37703207 - 37704696
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
GTTACATTGATG
Flanking Amino Acid:
KSLDHSGALGGLVVGFILTV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
76.2
0.65
1
67
39.8
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
53.5
-0
1.7
61.5
40.3

Associated Gene:

Gene:
TMEM19
Ensembl Gene ID:
ENSAPLG00000002431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029715
37686766 - 37709160
22395
ENSAPLT00000002445
37696456 - 37707762
11307
ENSAPLT00000042213
37696366 - 37709160
12795