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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37733123_37739226_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37733123 - 37739226
Intron Length:
6104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AAAAATTGAACT
Flanking Amino Acid:
FNDKHITTLQASFLTKKLNI
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
48.7
-0
1.6
63.85
39.4

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023565
37732958 - 37755942
22985
ENSAPLT00000020181
37732958 - 37744585
11628
ENSAPLT00000047548
37732958 - 37743540
10583