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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37739287_37739491_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37739287 - 37739491
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
ATTTTGAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTATTTTGAATG
Flanking Amino Acid:
GGKRVNLAIWDTAGQERFHA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.7
0.53
1
67.7
42.1
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
54.5
0
1.5
57.3
38.6

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047548
37732958 - 37743540
10583
ENSAPLT00000023565
37732958 - 37755942
22985
ENSAPLT00000020181
37732958 - 37744585
11628