Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37739600_37741167_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37739600 - 37741167

Intron Length:

1568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGGAG

5'SS Class:

major

3'SS Sequence:

ATTCTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TATTCTTTATGC

Flanking Amino Acid:

DITDEDSFQKVKNWVKELRK

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

42.1

Major BPS

83.9

0.84

73.9

41.3

Major PPT

82.2

0.72

0.9

77.8

34.9

Minor 5ss

27.6

-2.6

3.6

37.4

47.3

Minor BPS

58.8

0.25

1.9

71.12

40.5

Associated Gene:

Gene:

RAB21

Ensembl Gene ID:

ENSAPLG00000029848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047548

37732958 - 37743540

10583

ENSAPLT00000023565

37732958 - 37755942

22985

ENSAPLT00000020181

37732958 - 37744585

11628