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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37741232_37741967_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37741232 - 37741967
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATTGCATTAATT
Flanking Amino Acid:
LGNEICLCIVGNKIDLEKER
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78.1
0.63
0.9
74.4
35.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
67.6
0.63
1.7
83.58
37.4

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047548
37732958 - 37743540
10583
ENSAPLT00000023565
37732958 - 37755942
22985
ENSAPLT00000020181
37732958 - 37744585
11628