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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37742023_37742435_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37742023 - 37742435
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TGCCTTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATCT
Flanking Amino Acid:
ERHVSVQEAETYAESVGAKH
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.3
72.3
39.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79
0.65
0.8
72.5
32.4
Minor 5ss
35.9
-1.6
2.9
43.9
36.8
Minor BPS
74
0.83
1.5
87.39
38.7

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047548
37732958 - 37743540
10583
ENSAPLT00000023565
37732958 - 37755942
22985
ENSAPLT00000020181
37732958 - 37744585
11628