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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37742525_37743400_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37742525 - 37743400
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
ACTTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATCTACT
Flanking Amino Acid:
IEELFLDLCKRMIETAQVDE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
73.1
35.7
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
53.5
0.19
2.1
80.5
40.6

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047548
37732958 - 37743540
10583
ENSAPLT00000023565
37732958 - 37755942
22985
ENSAPLT00000020181
37732958 - 37744585
11628