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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37743476_37744574_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37743476 - 37744574
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTACAGA
5'SS Class:
major
3'SS Sequence:
TCCTATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTCCTATATT
Flanking Amino Acid:
GSSQSGTARRGLE*
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1
60
40.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.3
0.66
0.9
73.3
35.5
Minor 5ss
38.7
-1.3
2.9
48.6
47.2
Minor BPS
65.6
0.57
2
87.87
37.8

Associated Gene:

Gene:
RAB21
Ensembl Gene ID:
ENSAPLG00000029848
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020181
37732958 - 37744585
11628