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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37767747_37767977_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37767747 - 37767977
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGTG
5'SS Class:
major
3'SS Sequence:
GTTTGTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGATT
Flanking Amino Acid:
ISGVLRVIEKENEVIVDWRP
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62.3
42.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.4
0.59
0.9
70.7
39.8
Minor 5ss
39
-1.2
3.6
55.1
49.2
Minor BPS
66.6
0.6
1.6
85.34
34.6

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532