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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37770460_37774162_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37770460 - 37774162
Intron Length:
3703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
AATTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CATGCTTTAATT
Flanking Amino Acid:
KCLENHVVLSESPQDKRILL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.9
0.76
0.8
78
35.4
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
68
0.64
1.4
76.34
41.1

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532