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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37775406_37776886_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37775406 - 37776886
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GTGTTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTCATATAACA
Flanking Amino Acid:
EEPGFEVITRIDLGKQPEVS
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
66
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
1
76.9
42.1
Minor 5ss
32.1
-2
3.3
36.6
41.6
Minor BPS
53.4
0.1
1.8
69.63
35.7

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532