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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37779023_37779300_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37779023 - 37779300
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GGTTTCAAAATA
Flanking Amino Acid:
EERANLQKRKTDEYFRMKLQ
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
71.4
40.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
32
-2.1
2.6
34.1
33.8
Minor BPS
48.2
-0.1
1.9
61.34
38.8

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532