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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37779396_37779951_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37779396 - 37779951
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
GAACTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAACT
Flanking Amino Acid:
SRLRDYRSLIEKDVNRTDRT
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.2
0.37
1
62.2
43.8
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
77.7
0.95
1.1
85.51
34.9

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532