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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37781941_37782667_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37781941 - 37782667
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTATTTTATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCC
Flanking Amino Acid:
WCFVSYMDQMHQNFEEQMQG
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.1
0.77
0.9
77.8
40.4
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
62.7
0.38
1.6
74.3
36.6

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532