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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37785860_37786503_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37785860 - 37786503
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGTA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
AISMQMMNCKELPQAVSEIL
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.2
73.1
38.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
38.3
-1.3
3.7
55.3
48.9
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
TBC1D15
Ensembl Gene ID:
ENSAPLG00000002695
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002784
37755912 - 37787443
31532