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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37798364_37802019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37798364 - 37802019
Intron Length:
3656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TATCCATCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTCTTTATCC
Flanking Amino Acid:
LPEERPAGLALNRSSSGKNE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.5
42
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.1
0.52
0.8
67.1
33.8
Minor 5ss
35.8
-1.6
3.2
49.6
39.8
Minor BPS
71.3
0.65
1.5
78.99
36.4

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291