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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37803409_37803511_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37803409 - 37803511
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATACTCAATA
Flanking Amino Acid:
PPENIWTDEEDLDCVPWFPR
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
84.4
29.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.1
0.72
0.8
76.9
31.8
Minor 5ss
25
-2.9
4.2
41
45.6
Minor BPS
55.9
0.18
1.7
65.63
40.8

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003534
37797490 - 37867780
70291
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234