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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37803613_37806997_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37803613 - 37806997
Intron Length:
3385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTCCTCGCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATAAAT
Flanking Amino Acid:
YGSELDADHPGFKDNVYRQR
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.2
0.41
1
71.6
33.2
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
56
0.27
1.7
78.62
37.2

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291