About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37807066_37812927_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37807066 - 37812927
Intron Length:
5862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAT
Flanking Amino Acid:
YFVDVAMSYKYGQPIPRVEY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
70
0.71
1.3
80.49
34.7

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291
ENSAPLT00000045384
37797490 - 37849591
52102