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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37813125_37814913_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37813125 - 37814913
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATCTCCTTCACT
Flanking Amino Acid:
QLEDVSIFLKERSGFTVRPV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.8
77.9
29.3
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
73
0.8
1.7
86.17
40

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291