Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37815050_37820421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37815050 - 37820421

Intron Length:

5372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGTCGC

5'SS Class:

major

3'SS Sequence:

TCTGTTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTTCTGTAATG

Flanking Amino Acid:

HGSDPLYTPEPDTCHELLGH

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.4

1.4

58.4

46.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

73.5

0.53

0.8

66.2

35.9

Minor 5ss

36.4

-1.5

2.9

49.3

Minor BPS

59.4

0.16

69.15

39.1

Associated Gene:

Gene:

TPH2

Ensembl Gene ID:

ENSAPLG00000003421

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045384

37797490 - 37849591

52102

ENSAPLT00000039933

37797490 - 37868723

71234

ENSAPLT00000003534

37797490 - 37867780

70291