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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37820549_37841187_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37820549 - 37841187
Intron Length:
20639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
ATATATTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GTTTCTATATAT
Flanking Amino Acid:
SDEDVQKLATCYFFTIEFGL
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
56.2
44.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
79.8
0.67
0.9
73.1
41.1
Minor 5ss
30
-2.3
2.8
36.8
40.5
Minor BPS
50.3
0.09
2
75.13
41.2

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291