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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37848673_37848760_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37848673 - 37848760
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AAGGTGTTAATT
Flanking Amino Acid:
ESFEEAKEKMRDFAKSINRP
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
47.5
-0.1
2.1
62.38
42.5

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045384
37797490 - 37849591
52102
ENSAPLT00000039933
37797490 - 37868723
71234
ENSAPLT00000003534
37797490 - 37867780
70291