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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37848891_37868705_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37848891 - 37868705
Intron Length:
19815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTATTTATTT
Flanking Amino Acid:
VQDLRSDLNTEKFPE*
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
67.4
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
43.4
-0.7
3.2
67
44.2
Minor BPS
51.2
0.12
1.8
67.9
43.9

Associated Gene:

Gene:
TPH2
Ensembl Gene ID:
ENSAPLG00000003421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039933
37797490 - 37868723
71234