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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37923489_37928331_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37923489 - 37928331
Intron Length:
4843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
RSSYVLHGERRFLGVTQFSP
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
80.6
0.69
0.8
72
37.9
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028386
37922647 - 38121350
198704
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704
ENSAPLT00000046425
37922647 - 38121350
198704
ENSAPLT00000029862
37922647 - 38121350
198704