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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37961097_38003386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37961097 - 38003386
Intron Length:
42290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
FKVPYSLPKLDLLAVPKHPY
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
85.2
0.79
0.8
77
36.1
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028386
37922647 - 38121350
198704
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704
ENSAPLT00000046425
37922647 - 38121350
198704
ENSAPLT00000029862
37922647 - 38121350
198704