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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38003542_38009417_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38003542 - 38009417
Intron Length:
5876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATAG
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
MVIVHELCHQWFGDLVTPVW
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
63.2
37.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.4
0.82
0.7
80.9
30.3
Minor 5ss
43.4
-0.7
2.8
55.8
48.4
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028386
37922647 - 38121350
198704
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704
ENSAPLT00000046425
37922647 - 38121350
198704
ENSAPLT00000029862
37922647 - 38121350
198704