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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38009532_38054644_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38009532 - 38054644
Intron Length:
45113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
TDYLYPGWNMDYLTIHKYGN
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
73.2
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.7
81.7
30.1
Minor 5ss
50.3
0.01
2.4
63.2
42.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028386
37922647 - 38121350
198704