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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38037929_38054644_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38037929 - 38054644
Intron Length:
16716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
GHSVFQMGLQDYLTIHKYGN
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.7
81.7
30.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704