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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38037929_38057236_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38037929 - 38057236
Intron Length:
19308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
GHSVFQMGLQALKRVGKSVN
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.9
87.3
23.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029862
37922647 - 38121350
198704