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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3805445_3810373_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3805445 - 3810373
Intron Length:
4929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CAGTCTTTGATT
Flanking Amino Acid:
KEKEKHKHEKIKVEPVVPAP
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.9
0.67
0.9
75.3
33.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
64.6
0.54
1.2
70.92
41

Associated Gene:

Gene:
TAF3
Ensembl Gene ID:
ENSAPLG00000010030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010448
3718350 - 3830929
112580