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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38083570_38096989_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38083570 - 38096989
Intron Length:
13420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATACTAACT
Flanking Amino Acid:
GLIDDAFNLARAGYLPQNIP
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.3
0.64
1
73.2
41.7
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
50.7
0.1
2
75.74
40.1

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029862
37922647 - 38121350
198704
ENSAPLT00000028386
37922647 - 38121350
198704
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704
ENSAPLT00000046425
37922647 - 38121350
198704