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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38099844_38113793_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38099844 - 38113793
Intron Length:
13950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GCTTATTTAACA
Flanking Amino Acid:
ISDWISSNRNRIPLNVRDIV
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
35.6
-1.6
2.7
43.2
43.8
Minor BPS
68
0.56
1.5
72.93
38.9

Associated Gene:

Gene:
TRHDE
Ensembl Gene ID:
ENSAPLG00000004571
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028386
37922647 - 38121350
198704
ENSAPLT00000028276
37922647 - 38121350
198704
ENSAPLT00000004697
37922647 - 38121350
198704
ENSAPLT00000046425
37922647 - 38121350
198704
ENSAPLT00000029862
37922647 - 38121350
198704