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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3810457_3826230_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3810457 - 3826230
Intron Length:
15774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CAGCTCTTAACG
Flanking Amino Acid:
TLRVGAGQDKIVISKVVPAP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.4
0.71
0.9
77.9
36.6
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
60.9
0.21
1.4
57.46
44

Associated Gene:

Gene:
TAF3
Ensembl Gene ID:
ENSAPLG00000010030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010448
3718350 - 3830929
112580