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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3830031_3830814_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3830031 - 3830814
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
CTGTCCTCCACA
Flanking Amino Acid:
GCDDCDDWYHWPCVGITTAP
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
74.7
0.56
0.8
68.5
31.9
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
53.9
0.11
2
67.23
45.3

Associated Gene:

Gene:
TAF3
Ensembl Gene ID:
ENSAPLG00000010030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010448
3718350 - 3830929
112580