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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38308954_38309536_R

Intron Information:

Intron Rank:
138756
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
38308954 - 38309536
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
AATTCATTATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATGCTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
49.4
-0
1.7
60.5
44.1
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
50.3
0.09
2
70.84
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022165
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044151
38308058 - 38309666
1609