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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3862327_3862964_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3862327 - 3862964
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGCG
5'SS Class:
major
3'SS Sequence:
TTTCTCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCGT
U12 Branch Point Sequence:
TTTCTCGTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.6
40.8
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
85.6
0.8
0.8
79.9
32.1
Minor 5ss
35.5
-1.7
2.9
42
44.7
Minor BPS
49.6
-0
2.3
72.36
39.3

Associated Gene:

Gene:
GATA3
Ensembl Gene ID:
ENSAPLG00000010046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042132
3861714 - 3881647
19934