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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38633979_38634918_R

Intron Information:

Intron Rank:
135879
Intron Class:
major
Intron Phase:
Intron Coordinates:
38633979 - 38634918
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TTGTGCTCAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
81.2
0.7
0.9
77.4
41.2
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
44.5
-0.3
2.4
67.86
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038269
38633807 - 38635182
1376