Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3863587_3866201_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3863587 - 3866201

Intron Length:

2615

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCGCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAC

U12 Branch Point Sequence:

TGTGCTTTTTTT

Flanking Amino Acid:

TVQRYPTAHHGSQVCRPPLL

Intron Amino Acid Position:

349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

65.7

0.39

1.2

67.4

36.7

Major PPT

0.7

0.8

77.3

31.4

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

39.5

-0.7

3.5

67.81

43.6

Associated Gene:

Gene:

GATA3

Ensembl Gene ID:

ENSAPLG00000010046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042132

3861714 - 3881647

19934

ENSAPLT00000010467

3862542 - 3881647

19106