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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38647111_38654809_R

Intron Information:

Intron Rank:
139132
Intron Class:
major
Intron Phase:
Intron Coordinates:
38647111 - 38654809
Intron Length:
7699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TCTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TCCACTGCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.6
41.7
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
85.8
0.8
0.7
80.4
24.8
Minor 5ss
25.7
-2.8
2.9
22.3
37.3
Minor BPS
45.7
-0.2
2.2
64.21
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022328
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031275
38646756 - 38655822
9067