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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38647173_38649780_F

Intron Information:

Intron Rank:
141920
Intron Class:
major
Intron Phase:
Intron Coordinates:
38647173 - 38649780
Intron Length:
2608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AGACCATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
55.8
0.16
1.6
61.84
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022956
38646756 - 38650768
4013