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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38654529_38667392_F

Intron Information:

Intron Rank:
144869
Intron Class:
major
Intron Phase:
Intron Coordinates:
38654529 - 38667392
Intron Length:
12864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.4
0.64
0.9
69.2
41.6
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
56
0.27
2.2
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028106
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025486
38654488 - 38667466
12979