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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38655962_38665774_R

Intron Information:

Intron Rank:
139138
Intron Class:
major
Intron Phase:
Intron Coordinates:
38655962 - 38665774
Intron Length:
9813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.6
84.7
23.1
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022328
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036009
38646756 - 38666100
19345